Taxonomy

Modern biologists accept many of the conclusions of the early evolutionary taxonomists, such as the relationships of the major animal phyla, as determined by the comparative morphology of their embryos. However, these early classification systems all had a weakness in that they were based, at least in part, on the intuition of taxonomists. Thus, all early classification systems had a strong element of subjectivity.

In the 1950s, R. R. Sokal and P. H. A. Sneath advocated the use of numerical taxonomy to remove the subjectivity of classification. In their method, all relevant characters (morphological features) of a group of organisms are numerically coded and the overall similarity is calculated by use of a mathematical algorithm. Initially, many traditional taxonomists rejected numerical taxonomy, since its results sometimes contradicted their own decade-long studies of comparative morphology. However, nearly all modern taxonomists currently use numerical methods in taxonomy, although there is often very contentious debate about which particular algorithms should be used.

In recent years, advances in molecular biology have had a profound impact on the field of taxonomy. In particular, biologists can now clone and sequence the DNA (deoxyribonucleic acid) in the genes of many different organisms and compare these DNA sequences to estimate relationships and construct classification systems. The use of such molecular data in taxonomy has several advantages. First, classification schemes for groups such as the fungi, whose phylogeny has long confounded the many taxonomists who rely upon more traditional morphological characters, can now be determined more easily. Second, organisms typically have many thousands of different genes, so there is a potential database of characters which is virtually unlimited in size. Third, since changes in DNA form the basis for all other evolutionary changes, such as changes in morphology, comparison of gene sequences allows study of evolution at its most basal level. Comparative studies of morphology will continue to play an important role in taxonomy, but gene sequences are becoming more widely used as gene sequencing becomes easier.